Table 1.
Summary of data available in the current release of TcSNP, showing the numbers of sequences, alignments and SNPs
| Sequences | Number | Strains |
|---|---|---|
| Reference coding sequencesa | 25 013 | 1 |
| Expressed sequence tags | 13 968 | 3 |
| Other (mRNAs, genomic) | 2038 | 295b |
| Alignments | ||
| Total No. of alignments | 7482 | |
| Alignments with two reference sequencesc | 5280 | |
| SNPsd | ||
| Total No. of SNPs | 269 686 | |
| With P > 0.7 | 195 160 | |
| Within high quality neighborhoodse | 204 823 | |
| Synonymous | 110 031 | |
| Non-synonymous | 111 117 |
aFrom the reference CL Brener genome (12).
bThis figure includes redundancy in strain names, see Methods section for more information.
cAllelic variants of the two CL Brener haplotypes.
dNumber of SNPs in each row is independent from other rows.
eLess than three SNPs in a window of 10 bp.