Table 2.

Query options of Strepto-DB

Query name	Query action
BLAST	Perform a sequence comparison –with the blastp program against the Strepto-DB protein sequences –with the blastn program against the Strepto-DB gene sequences –with the blastn program against the Strepto-DB chromosome, contig and plasmid sequences
Genes/Proteins	Search for genes and proteins by name, locus tag, GO term, keyword, EC number or database identifier
Genome Viewer	Browse a selected genome with the Circular Genome Viewer (CGView)
Intergenic Region Analysis	Search for a gene and its homologs to select an intergenic region for analysis with MUSCLE, Virtual Footprint and MEME
Proteome Comparison	Select a reference genome and one or more comparison genomes to view homologous proteins within the selected genomes
Sequences	Search for sequences or regular expressions within a selected chromosome, plasmid or contig