Table 1.
Statistics of the PRODORIC content (september 2008)
| Organism | TFBSs | Genes | Regulons | PWMsa | Promoters | Profilesb |
|---|---|---|---|---|---|---|
| Escherichia coli | 1670 | 1045 | 90 | 88 (76) | 740 | 64 (4666) |
| Bacillus subtilis | 785 | 738 | 88 | 71 (53) | 493 | 34 (2488) |
| Pseudomonas aeruginosa | 197 | 264 | 33 | 22 (19) | 164 | 16 (1292) |
| Staphylococcus aureus | 106 | 39 | 9 | – | 29 | – |
| Rhodobacter sphaeroides | 38 | 33 | 4 | 3 (3) | 28 | – |
| Streptococcus pyogenes | 18 | 13 | 5 | 3 (2) | 11 | 19 (416) |
| Bradyrhizobium japonicum | 14 | 22 | 3 | 3 (3) | 11 | – |
| Synechococcus sp. | 13 | 6 | 2 | – | 13 | – |
| Rhizobium meliloti | 12 | 4 | 8 | – | 11 | 2 (198) |
| Others | 68 | 67 | 25 | 7 (7) | 86 | 13 (402) |
| Sum | 2921 | 2231 | 267 | 197 (163) | 1586 | 148 (9462) |
aThe non-redundant number of position weight matrices (number in parentheses).
bThe sum of genes that are linked to the profiles (number in parentheses).