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. 2008 Oct 8;37(Database issue):D77–D82. doi: 10.1093/nar/gkn660

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© 2008 The Author(s)

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 3. — Database search tools and formatted query results. Search options include (A) a text-based search, (B) a tool for comparing standard motif representations against PBM-derived motifs in the database using the Tomtom program (33) from the Meta-MEME suite (22) and (C) a tool for scanning FASTA-formatted nucleotide sequences for matches to TF 8-mer binding profiles in the UniPROBE database. The Database Browser table formats the search results for viewing by (D) highlighting text search term matches, (E) presenting a graphical view of motif alignment and (F) illustrating 8-mer binding site matches along the input sequence (x-axis).