TABLE 2.
Oligonucleotide | Sequencea |
---|---|
Oligonucleotides used to make polar mutations in trb genes | |
TDF | 5′-GCTGGATCCATCGCTGGTGCGATGCTG-3′ |
TDR | 5′-GCTTCTAGAACCATCTCGACCCCTTCAG-3′ |
TJF | 5′-GCTGGATCCAATGGGCAATGTCGAAGATG-3′ |
TJR | 5′-GCTTCTAGAGCGCGAGAATGACGATCAG-3′ |
TKF | 5′-GCTTCTAGAGCAGGCACAAAAGGATCTG-3′ |
TKR | 5′-CGGCGATACCGACCTCGATG-3′ |
TFF | 5′-GCTGGATCCTCATCCCCTACATCGTTGAG-3′ |
TFR | 5′-GCTTCTAGACCATGCCTTTCAAAGCTGTG-3′ |
Oligonucleotides used to subclone trb genes | |
TrbJKF-N | 5′-GCTGAATTCGCAAAGGGGGATCGCCCATG-3′ |
TrbJR-N | 5′-GTCGGATCCGAGAATGACGATCAGACGCG-3′ |
R10-trbKF-N | 5′-GCTGAATTCGACGATGGAGCCACGCTGGTG-3′ |
R10-trbKJK3 | 5′-ATGAACATGATGCGTTTGAC-3′ |
Oligonucleotides used to clone Ptac-lacZ on pPZP200 | |
MfeI-For | 5′-GTCCAATTGTATACGCAAGGCGACAAGGTG-3′ |
NsiI-Rev | 5′-GTCATGCATACTTATTCAGGCGTAGCACCA-3′ |
Oligonucleotides used for mutagenesis | |
pJ_W269Stop-F | 5′-GAGCCACGCTGATGAGCTCGC-3′ |
pJ_W269Stop-R | 5′-GCGAGCTCATCAGCGTGGCTC-3′ |
pK_W75Stop-F | 5′-GAAACCGAGATGATAGTTCACC-3′ |
pK_W75Stop-R | 5′-GGTGAACTATCATCTCGGTTTC-3′ |
pTacR1 | 5′-ACGACGTTGTAAAACGACGGC-3′ |
pTacR2 | 5′-GCCATTCAGGCTGCGCAACTG-3′ |
Oligonucleotides used for nuclease S1 protection assay | |
trbKS1 | 5′-GGCTGGACAGTAATCCAGGTGCCGATGCCTGCACTACGAC-3′ |
23SRNAS1 | 5′-AGGCTCGGGCTCCGACTGTTTGTAGGCATCCGGTTTCAG-3′ |
Italics indicate restriction endonuclease cleavage sites used in plasmid construction.