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. 2009 Mar 20;191(10):3375–3383. doi: 10.1128/JB.01608-08

TABLE 2.

Oligonucleotides used in this study

Oligonucleotide Sequencea
Oligonucleotides used to make polar mutations in trb genes
    TDF 5′-GCTGGATCCATCGCTGGTGCGATGCTG-3′
    TDR 5′-GCTTCTAGAACCATCTCGACCCCTTCAG-3′
    TJF 5′-GCTGGATCCAATGGGCAATGTCGAAGATG-3′
    TJR 5′-GCTTCTAGAGCGCGAGAATGACGATCAG-3′
    TKF 5′-GCTTCTAGAGCAGGCACAAAAGGATCTG-3′
    TKR 5′-CGGCGATACCGACCTCGATG-3′
    TFF 5′-GCTGGATCCTCATCCCCTACATCGTTGAG-3′
    TFR 5′-GCTTCTAGACCATGCCTTTCAAAGCTGTG-3′
Oligonucleotides used to subclone trb genes
    TrbJKF-N 5′-GCTGAATTCGCAAAGGGGGATCGCCCATG-3′
    TrbJR-N 5′-GTCGGATCCGAGAATGACGATCAGACGCG-3′
    R10-trbKF-N 5′-GCTGAATTCGACGATGGAGCCACGCTGGTG-3′
    R10-trbKJK3 5′-ATGAACATGATGCGTTTGAC-3′
Oligonucleotides used to clone Ptac-lacZ on pPZP200
    MfeI-For 5′-GTCCAATTGTATACGCAAGGCGACAAGGTG-3′
    NsiI-Rev 5′-GTCATGCATACTTATTCAGGCGTAGCACCA-3′
Oligonucleotides used for mutagenesis
    pJ_W269Stop-F 5′-GAGCCACGCTGATGAGCTCGC-3′
    pJ_W269Stop-R 5′-GCGAGCTCATCAGCGTGGCTC-3′
    pK_W75Stop-F 5′-GAAACCGAGATGATAGTTCACC-3′
    pK_W75Stop-R 5′-GGTGAACTATCATCTCGGTTTC-3′
    pTacR1 5′-ACGACGTTGTAAAACGACGGC-3′
    pTacR2 5′-GCCATTCAGGCTGCGCAACTG-3′
Oligonucleotides used for nuclease S1 protection assay
    trbKS1 5′-GGCTGGACAGTAATCCAGGTGCCGATGCCTGCACTACGAC-3′
    23SRNAS1 5′-AGGCTCGGGCTCCGACTGTTTGTAGGCATCCGGTTTCAG-3′
a

Italics indicate restriction endonuclease cleavage sites used in plasmid construction.