TABLE 2.
Gene set enrichment analysis for genes upregulated in MAJ compared to MOPS minimal medium
| Gene set regulated bya: | FDR q valueb
|
|
|---|---|---|
| Exponential-phase MAJ/MOPS | Stationary-phase MAJ/MOPS | |
| RpoS | <0.001 | NS |
| Rcs phosphorelay | <0.001 | NS |
| RpoH | 0.208 | NS |
| CpxRA | NS | 0.001 |
| RpoE | NS | NS |
| Acid stress | 0.002 | 0.119 |
| Osmotic stress | <0.001 | 0.057 |
a
The RpoS (47, 59, 88), Rcs phosphorelay system (33), RpoH (58), CpxRA (27), RpoE (68), acid stress (2, 43, 53, 78, 83), and osmotic stress (86, 87) gene sets were determined from E. coli K-12 transcriptome and proteome studies.
b
FDR q values are reported for gene sets found to be significantly enriched in MAJ compared to MOPS. Only significant q values (<0.25) are reported. NS, not significant.