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. 2009 Apr 10;75(11):3733–3744. doi: 10.1128/AEM.00031-09

TABLE 3.

Selected transcripts upregulated in cells grown on cDCE compared to cells grown on glycolate

Sample Locus taga P valueb Change (fold)c Region or putative enzyme function
1 ctg94:3530095-ctg94:3530164 0.015 122.9 Intergenic region
2 Bpro3336 0.005 111.0 ABC transporter, extracellular ligand-binding receptor
3 Bpro0645d 0.012 99.8 GST-like protein
4 Bpro0646 0.012 87.5 PNPox-related protein
5 Bpro3335 0.009 70.0 ABC transporter, inner membrane translocator
6 Bpro0530 0.011 53.3 HAD, type II
7 Bpro5186 0.013 51.5 HAD, type II
8 Bpro0532 0.007 42.7 Hypothetical protein
9 ctg94:3611882-ctg94:3611943 0.011 41.7 Intergenic region
10 Bpro0531 0.015 40.9 Sodium/solute symporter
11 Bpro5185 0.017 39.2 Sodium/solute symporter
12 Bpro3334 0.010 30.8 ABC transporter, inner membrane translocator
13 Bpro3333 0.013 27.1 ABC transporter, ATPase component
14 Bpro0529 0.013 24.3 Conserved hypothetical protein
15 ctg94:581640-ctg94:581753 0.033 21.7 Intergenic region
16 ctg94:2876701-ctg94:2876845 0.011 20.8 Intergenic region
17 ctg94:529265-ctg94:529416 0.014 20.0 Intergenic region
18 Bpro5184 0.004 19.0 Predicted membrane protein
19 Bpro3332 0.005 18.3 ABC transporter, ATPase component
20 Bpro2731 0.016 17.9 Conserved hypothetical protein
23 Bpro2396 0.017 14.8 Heme peroxidase
30 Bpro0577 0.025 10.4 CO DHase
31 Bpro5565 0.024 10.1 CMO
40 Bpro5566 0.056 7.3 Hlase
44 Bpro5564 0.010 6.3 Alcohol dehydrogenase
75 Bpro3866 0.027 3.6 Universal stress protein (UspA)
81 Bpro5301 0.010 3.5 Cytochrome P450
83 Bpro2732 0.018 3.4 Transposase
92 Bpro4792 0.030 3.2 Transposase
95 Bpro4575 0.024 3.1 Transposase
100 Bpro3227 0.040 3.0 Universal stress protein (UspA)
a

Intergenic regions, which do not have locus tags, are indicated by their positions in the contig.

b

P values are based on a one-way analysis of variance Welch t test with Benjamini-Hochberg multiple-test correction and an FDR of 5% for the genes identified.

c

Genes upregulated at least 1.5-fold in cDCE-grown cells compared to glycolate-grown cells with an FDR of 5% (P < 0.05). The P value for Bpro5566 was 0.056.

d

Genes and the corresponding proteins that were identified as upregulated by growth on cDCE in microarray and proteomic experiments are indicated by bold type.