Table 1.

Benchmark tests of the CLADIST program and the DICHOT system.

	A	B	C	D	E
Test1	3546	200	1303	194	92.4%
Test2	3573	173	994	503	86.1%
Test3	3673	73	1448	49	97.7%

A: Number of correctly assigned residues in structural domains

B: Number of incorrectly assigned residues in structural domains

C: Number of correctly assigned residues in ID regions

D: Number of incorrectly assigned residues in ID regions

E: Percentage of correctly assigned residues given by 100 × (A + C)/(A + B + C + D)

Test1: CLADIST under standard conditions (using homologues with e-values less than 10^-3); Test2: CLADIST using homologues with e-values less than 10^-100; Test3, The DICHOT system