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Imputation error rate (%) obtained by GEDI on the three HapMap simulated admixtures GEDI-1ANC denotes imputation based on only one ancestral reference population, GEDI-2ANC denotes imputation based on both ancestral reference populations, while WINPOP+GEDI denotes imputation of each SNP genotype based on the local ancestry estimated by WINPOP
| Method | YRI-CEU | CEU-JPT | JPT-CHB |
|---|---|---|---|
| GEDI–1ANC | 13.12 | 6.85 | 4.04 |
| GEDI–2ANC | 6.43 | 3.97 | 3.48 |
| WINPOP+GEDI | 5.69 | 3.64 | 3.39 |
