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. 2009 May 27;25(12):i348–i355. doi: 10.1093/bioinformatics/btp216

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© 2009 The Author(s)

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 3. — A comparison of sampled linker lengths distributions derived from cell population data that was sampled by one of two models: a model that recognizes nucleosome periodic sequence preferences (using the Nuc model, in green) and a model that does not (using the Nuc^U model, in orange). The comparison was performed for four different NCFs. For each NCF, the distribution was similar in both cases, but the preference for quantized linker lengths was abolished when periodic nucleosome sequence preferences were removed. This demonstrates that preferentially quantized linker lengths distributions are mainly the result of the periodic sequence preferences of the nucleosome itself.