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. 2009 May 27;25(12):i6–i14. doi: 10.1093/bioinformatics/btp222

Fig. 3.

Fig. 3.

Example of an HMM with three hidden states modeling time courses with an upregulation pattern. Above each state, the emission densities for the univariate case, light grey corresponds to the expression emission with parameters μm and σm and dark gray to the noise component.