Table 4.

The detailed performance for each layer in the prediction flow of the sequentially conducted partial matching procedure

Total		EC1		EC2		EC3		EC4		EC5		EC6
			Oxidoreductases		Transferases		Hydrolases		Lyases		Isomerases		Ligases
Layers	pairs	precision	pairs	precision	Pairs	precision	pairs	precision	pairs	precision	pairs	precision	pairs	Precision
Single mode
R:D:M	4097	73.8%	1318	79.5%	1340	78.6%	825	52.4%	316	86.7%	107	97.1%	191	57.5%
R:D	629	71.0%	283	67.1%	84	73.8%	87	74.7%	111	84.6%	55	60.0%	9	33.3%
D:M	14	42.8%	3	0.0%	5	60.0%	2	50.0%	4	50.0%	0	0.0%	0	0.0%
R:M	187	47.0%	52	40.3%	57	45.6%	34	55.8%	38	50.0%	2	50.0%	4	50.0%
R	117	43.5%	45	60.0%	16	56.2%	12	41.6%	33	24.2%	9	22.2%	2	0.0%
D	57	42.1%	27	29.6%	5	60.0%	4	50.0%	10	80.0%	9	22.2%	2	50.0%
M	19	10.5%	8	12.5%	7	14.2%	0	0.0%	3	0.0%	0	0.0%	1	0.0%
(No hit)	207	0.0%	61	0.0%	38	0.0%	32	0.0%	50	0.0%	23	0.0%	3	0.0%
Total	5327	71.1%	1736	74.6%	1514	76.4%	964	54.4%	515	78.6%	182	78.0%	209	55.5%
Multiple mode
R:D:M	4274	87.6%	1712	88.5%	1415	88.9%	648	81.0%	227	95.5%	107	97.1%	165	75.7%
R:D	670	84.1%	287	83.2%	97	90.7%	104	89.4%	113	92.0%	59	59.3%	10	50.0%
D:M	8	62.5%	1	100.0%	3	66.6%	4	50.0%	0	0.0%	0	0.0%	0	0.0%
R:M	96	78.1%	31	83.8%	28	75.0%	19	84.2%	16	68.7%	2	50.0%	0	0.0%
R	123	56.0%	45	66.6%	26	50.0%	18	61.1%	27	37.0%	6	66.6%	1	100.0%
D	100	37.0%	45	22.2%	28	60.7%	3	66.6%	14	50.0%	8	0.0%	2	50.0%
M	20	45.0%	5	80.0%	7	42.8%	2	50.0%	5	20.0%	0	0.0%	1	0.0%
(No hit)	378	0.0%	143	0.0%	76	0.0%	44	0.0%	81	0.0%	23	0.0%	11	0.0%
Total	5669	85.1%	2126	85.8%	1604	87.4%	798	81.4%	402	87.0%	182	79.1%	179	73.7%