Table 3.

Total calculation time in seconds for each dataset and each prediction method

Methods	dataset1	dataset2	dataset3
proposed	3781	42767	299941
centroid (M1)	339	2712	26832
rnafold (M1)	97	291	648
simfold (M1)	228	1522	5264
mxscarna-centroid (M2)	12033	170428	-
mxscarna-alifold (M2)	9845	137373	-
mxscarna-petfold (M2)	15062	206548	-
probcons-centroid (M2)	3097	35359	219538
probcons-alifold (M2)	1001	8069	33012
probcons-petfold (M2)	7455	93128	402333
raf-centroid (M2)	68684	10523753	-
raf-alifold (M2)	66370	10494276	-
raf-petfold (M2)	71818	10570216	-
raf (M3)	66180	10493751	-