Table 1.

Websites containing many references to popular protein annotation tools

http://www.bioinformatics.ca/links_directory

http://www.ncbi.nlm.nih.gov/Tools

http://www.ebi.ac.uk/Tools

http://www.expasy.org/tools

http://www.cbs.dtu.dk/services

http://hum-molgen.org/bioinformatics

http://sites.univ-provence.fr/~wabim/english/logligne.html

http://www.bioinformatics.fr/bioinformatics.php

http://www.brc.dcs.gla.ac.uk/~mallika/bioinformatics-tools.html

Some of these lists also contain references to data resources, but they all have special sections for prediction tools.