Table 1.
Gene Symbol | Affymetrix Identifier | Description |
---|---|---|
CR-Downregulated | ||
H2-AaA | 1452431_s_at | Histocompatibility 2, class II antigen A, alpha |
Cd74A | 1425519_a_at | CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated). Receptor for macrophage migration inhibitory factor (MIF) (Leng et al., 2003). |
TgtpA | 1449009_at | T-cell specific GTPase |
Ifi27A | 1426278_at | Interferon, alpha-inducible protein 27 |
Col3alB | 1427884_at | Procollagen, type III, alpha 1 |
Col1a1B | 1423669_at | Procollagen, type I, alpha 1 |
Serpinh1B | 1450843_a_at | Serine (or cysteine) peptidase inhibitor, clade H, member 1 |
Ccl9 | 1417936_at | Chemokine (C-C motif) ligand 9 |
Ifitm3 | 1423754_at | Interferon induced transmembrane protein 3 |
Gng11 | 1448942_at | Guanine nucleotide binding protein (G protein), gamma 11 |
C1qb | 1417063_at | Complement component 1, q subcomponent, beta polypeptide |
Hsp110 | 1425993_a_at | Heat shock protein 110 |
CR-Upregulated | ||
Mt1C | 1422557_s_at | Metallothionein 1 |
Mt2C | 1428942_at | Metallothionein 2 |
Per1 | 1449851_at | Period homolog 1 (Drosophila) |
Per2 | 1417602_at | Period homolog 2 (Drosophila) |
Ppara | 1449051_at | Peroxisome proliferator activated receptor alpha |
Peci | 1431012_a_at | Peroxisomal delta3, delta2-enoyl-Coenzyme A isomerase |
Sult1a1 | 1427345_a_at | Sulfotransferase family 1A, phenol-preferring, member 1 |
MGI: 1924575 | 1436316_at | RIKEN cDNA 9430029L20 gene |
Ddit4 | 1428306_at | DNA-damage-inducible transcript 4 |
Nfkbia | 1449731_s_at | Nuclear factor of kappa light chain gene enhancer in B-cells inhibitor, alpha. Inhibitor of NF-κB DNA binding (Arenzana-Seisdedos et al., 1995) |
Fkpb5 | 1416125_at | FK506 binding protein 5 |
Rbm3simD | 1422660_at | Similar to RNA binding motif protein 3 |
Pim3 | 1451069_at | Proviral integration site 3 |
Tspan4 | 1448276_at | Tetraspanin 4 |
Cdkn1a | 1421679_a_at | Cyclin-dependent kinase inhibitor 1A (P21) |
Pnpla2 | 1428143_a_at | Patatin-like phospholipase domain containing 2 |
Immunity Group. Note that H2-Aa is an updated annotation and was previously H2-Ea in Swindell (2008). Promoter anlaysis identified five significantly overrepresented transcription factor binding sites that were present in the promoter regions of H2-Aa, Cd74, Tgtp and Ift27 (ADD_PAX8, TF_NFY, TF_MAZR, TF_MZF, MIT_013LEF) (P < 0.05).
Collagen Group. For most analyses, since two transcripts were associated with Col3a1, expression values associated with both transcripts were averaged. Promoter anlaysis identified five significantly overrepresented transcription factor binding sites that were present in the promoter regions of genes in this module (TF_MAF, TF_MYB, TF_MEIS, TF_NFKB) (P < 0.004).
Metallothioneins. Promoter anlaysis identified twelve significantly overrepresented transcription factor binding sites that were present in the promoter regions of genes in this module (TF_MIF, TF_STAT, TF_ZIC, TF_HEN1, TF_HNF4, TF_SREBP, TF_OLF1, ADD_MTF1A, ADD_MTF1B, MIT_051TATA, TF_MYB, ADD_PAX8) (P < 0.04).
Rbm3sim is an unofficial gene symbol for LOC100043257. Updated from Swindell (2008).