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. 2009 Apr 7;10(4):R34. doi: 10.1186/gb-2009-10-4-r34

Table 3.

Gene Ontology categories significantly enriched among motif-containing genes

Motif GO category Description p-value Adjusted p-value
GLYCB GO:0016530 Metallochaperone activity 1.00E-05 0.0004
MICB GO:0016530 Metallochaperone activity 1.00E-05 0.0004
NTBA GO:0022414 Reproductive process 1.00E-06 0.0001
NTBA GO:0016530 Metallochaperone activity 1.00E-05 0.0004
NTBB GO:0002376 Immune system process 1.00E-06 0.0002
NTBB GO:0009987 Cellular process 0.0005 0.0110
NTBB GO:0009055 Electron carrier activity 0.0025 0.0371
NTBB GO:0008152 Metabolic process 0.0026 0.0367
NTBB GO:0030234 Enzyme regulator activity 0.0030 0.0400
RPA GO:0045735 Nutrient reservoir activity 1.00E-06 0.0001
RPA GO:0005840 Ribosome 1.45E-06 0.0001
RPA GO:0005198 Structural molecule activity 3.65E-06 0.0002
RPA GO:0006412 Translation 0.0001 0.0039
RPA GO:0009987 Cellular process 0.0004 0.0096
RPA GO-0043226 Organelle 0.0005 0.0110
RPA GO-0032991 Macromolecular complex 0.0005 0.0107
RPA GO:0051234 Establishment localization 0.0008 0.0148
RPA GO:0051179 Localization 0.0008 0.0156
RPB GO-0044421 Extracellular region part 1.00E-07 3.52E-05
RPB GO:0022414 Reproductive process 1.00E-06 0.0001
RPB GO:0016530 Metallochaperone activity 1.00E-05 0.0003
RPB GO:0006412 Translation 0.0001 0.0020
RPB GO:0005840 Ribosome 0.0003 0.0074
RPB GO-0043226 Organelle 0.0010 0.0172
RPB GO:0009987 Cellular process 0.0018 0.0285
RPB GO:0005198 Structural molecule activity 0.0018 0.0282

Significantly enriched GO categories (adjusted p-value < 0.05) for motif-containing genes. The results are listed by each motif and ordered based on their Benjamini Hochberg adjusted p-value. A good correlation is observed between the functional pathways associated with the seed genes and the GO category that is over-represented in the corresponding motif-containing genome-wide gene sets in the case of motifs NTBB, RPA and RPB.