Table 2.
Contents of the FANTOM4 instance of EdgeExpressDB: edges
| Edges | Source | Relationship |
| TF-promoter (L2) | Predictions (FANTOM4 [1]) | Belongs to |
| Promoter (L2)-promoter region (L3) | FANTOM4 [1] | Belongs to |
| Promoter region (L3)-gene | FANTOM4 [1] | Belongs to |
| Promoter region (L3)-pre-miRNA | FANTOM4 [1] | Belongs to |
| Pre-miRNA-mature miRNA | FANTOM4 [1] | Belongs to |
| miRNA-target | ElMMo (SIB) [10] | Interaction |
| Protein-protein | Published | Interaction |
| TF-gene | Published | Interaction |
| TF-gene | ChIP-chip | Interaction |
| TF-gene (perturbation edge) | siRNA knockdown | Interaction |
| miRNA-target (perturbation edge) | miRNA overexpression | Interaction |
TF, transcription factor.