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. 2009 May 13;106(21):8471–8476. doi: 10.1073/pnas.0903503106

Table 1.

RDC calculation statistics

Subdomains PDB NRDCa DA, Hzb DR/DAc α, ° β, ° γ, ° rmsd, Hzd Qe Szz, ×104 Syy, ×104 Sxx, ×104 GDO, ×104f ηg
NBD IA-IB-IIA best fit E. coli DnaK 1DKG.pdb 108 −11.62 0.29 80.27 79.16 93.75 5.28 0.43 −9.54 6.81 2.73 9.83 0.43
Error selfh 0.63 0.07 44.74 2.15 50.55 0.30 0.03 0.52 0.49 0.53 0.50 0.10
Error mci 0.80 0.07 40.02 1.98 38.79 0.41 0.04 0.66 0.49 0.58 0.64 0.10
NBD IIB best fit E. coli DnaK 1DKG.pdb 29 −12.09 0.22 97.98 64.16 78.93 5.32 0.43 −9.93 6.61 3.32 10.11 0.33
Error selfh 1.45 0.16 47.68 3.66 13.25 0.77 0.07 1.19 1.08 1.46 1.11 0.24
Error mci 1.14 0.11 45.59 5.52 80.27 79.16 93.75 0.94 1.05 0.98 0.96 0.17
SBD BETA-LID best fit E. coli DnaK 1DKX.pdb 79 −14.38 0.31 30.54 81.86 120.07 2.67 0.19 −11.81 8.62 3.19 12.22 0.46
Error selfh 0.44 0.03 34.46 1.39 33.40 0.37 0.03 0.36 0.25 0.34 0.33 0.05
Error mcj 0.29 0.02 41.00 0.87 41.28 0.25 0.02 0.24 0.18 0.27 0.22 0.04

Best fits were computed using a grid-search program optimizing DA, DR/DA, and the three tensor orientation angles α, β, and γ.

aNumber of dipolar restraints used.

bDA = [Szz − (Syy + Sxx)/2]* DMAX, where DMAX is the full dipolar coupling (22 KHz).

cDR = (Sxx − Syy) * DMAX.

drmsd of RDC fit.

eQ = RMSD/[(Σi=1NRDC(RDC(i)exp)2)/NRDC].

fGDO = 2/3(Szz2+Syy2+Sxx2).

gη = (Sxx − Syy)/Szz.

hThirty fits were computed for NBD and SBD each, using on average 60% of the RDC data, randomly picked (self-validation).

iForty sets of synthetic RDC data, corresponding to the actual available RDC data for NBD IA, IB, and IIA, with a Monte Carlo random error of 15 degrees in NH orientation and a random RDC measurement error of 2 Hz were analyzed.

jForty sets of synthetic RDC data, corresponding to the actual available RDC data for the SBD, with a random error of 5° degrees in NH orientation and a random RDC measurement error of 2 Hz were analyzed.