Table II.
Top 10 differentially regulated genes between NT and ΔDDKPtRR13 at 24 h
The genotype × time point interaction was significant only at 24 h after shoot excision. The top five up- and down-regulated genes at 1% FDR and 2-fold abundance threshold are displayed. Positive fold changes indicate higher transcript abundance in ΔDDKPtRR13, whereas negative fold changes indicate higher transcript abundance in NT.
| Description | Populus Gene Model | Closest Hit | Fold Regulation | P |
|---|---|---|---|---|
| MATE efflux family protein | fgenesh4_pg.C_LG_XI000017 | At3g21690.1 | 8.01 | 1.5E-05 |
| IAA-conjugating enzyme GH3-8 | gw1.III.363.1 | At4g27260.1 | 7.91 | 1.6E-07 |
| Transcription factor BEE3 | eugene3.01230094 | At1g73830.1 | 7.48 | 2.0E-05 |
| Cationic amino acid transporter CAT7 | grail3.0090011402 | At3g10600.1 | 7.11 | 7.5E-06 |
| Cytochrome P450 CYP81D2 | eugene3.00640122 | At4g37360.1 | 6.62 | 1.0E-04 |
| Calmodulin-binding protein IQD33 | grail3.0018026401 | At4g23060.1 | −8.56 | 1.0E-04 |
| Defense-related carboxylesterase SOBER1 | gw1.166.165.1 | At4g22300.1 | −8.23 | 1.0E-04 |
| Myb transcription factor MYB102 | fgenesh4_pg.C_LG_XI001038 | At4g21440.1 | −6.39 | 1.0E-04 |
| Abscisic acid stress ripening-like protein | grail3.0002027201 | gi16588758 | −6.27 | 1.0E-04 |
| Extensin-like protein | fgenesh4_pm.C_LG_X000304 | At3g22800.1 | −6.19 | 1.0E-04 |