Table I.

FTICR MS summary

Peptide and protein information for LC-MS analyses that were used for further statistical analysis are summarized for sample set 1, set 2, the combined set, and the overlap.

Data set	Tumor set 1	Tumor set 2	Total	Overlap sets 1 + 2
Number of analyzed samples	5 OR; 4 PD	5 OR; 5 PD	10 OR; 9 PD
Total unique peptides	14,933	16,059	17,263	13,729
Total unique proteins	1,998	2,271	2,556	1,713 (67%)