Table 4.

50 K breakpoint recovery results at the presence of missing data

	0.5%		1%		1.5%		2%		2.5%		3%
Pedigree	Precision	Recall	Precision	Recall	Precision	Recall	Precision	Recall	Precision	Recall	Precision	Recall
2-2	0.991	0.974	1.000	0.972	1.000	0.972	1.000	0.966	0.996	0.964	1.000	0.964
2–3	0.999	0.982	0.999	0.975	0.996	0.973	0.991	0.976	0.999	0.979	0.998	0.971
2-3-1	0.991	0.975	0.999	0.975	0.996	0.972	0.990	0.976	0.999	0.979	0.998	0.971
2-3-2	0.992	0.972	0.990	0.977	0.995	0.973	0.998	0.960	0.994	0.980	0.995	0.972
2-3-3	0.996	0.977	0.992	0.971	0.996	0.968	0.993	0.969	0.994	0.973	0.994	0.968
2-3-5	0.988	0.973	0.988	0.965	0.990	0.965	0.986	0.969	0.987	0.973	0.982	0.967
2-4-3	0.996	0.981	0.994	0.974	0.997	0.979	0.995	0.969	0.991	0.969	0.991	0.969
2-5-4	0.997	0.974	0.996	0.969	0.980	0.971	0.997	0.966	0.998	0.968	0.996	0.954
2-5-5	0.989	0.977	0.994	0.969	0.996	0.972	0.996	0.968	0.984	0.967	0.992	0.969
2-6-5	0.998	0.976	0.995	0.966	0.997	0.966	0.978	0.962	0.982	0.953	0.992	0.953
Average	0.994	0.976	0.995	0.971	0.994	0.971	0.992	0.968	0.992	0.970	0.994	0.966

Breakpoint recovery results: Average breakpoint recovery precision and recall by i Linker at the presence of 0.5–3% missing genotype data.