TABLE 6.

Comparison of amino acid substitutions across taxa in PHYE

	Site
PHYE	122	153	300	303	380	483	508	550	689	695	731	757	822	833	880	930	951	984	1058	1100
Population 1	N	I	P	I	M	V	F	V	Y	F	I	N	L	E	T	A	Y	L	D	T
Populations 2 and 3	N	I	P	I	M	V	F	V	Y	F	I	N	L	E	T	T	Y	L	D	T
Population 4	N	I	P	I	M	V	F	V	Y	F	I	N	L	V	T	T	Y	L	D	T
Population 5	N	I	P	I	I	V	F	V	Y	F	I	N	L	V	T	T	Y	L	D	T
Population 6	N	N	P	V	M	A	Y	I	D	C	I	H	V	E	S	T	D	L	E	K
Population 7	N	I	P	V	M	A	Y	I	D	C	I	H	V	E	S	T	D	L	E	K
Population 8	D	I	P	V	M	A	Y	I	D	C	I	H	V	E	T	T	D	L	E	K
Population 9	N	I	S	V	M	A	Y	I	D	C	I	H	V	E	T	T	D	F	E	K
Populations 9 and 10	N	I	S	V	M	A	Y	I	D	C	I	H	V	E	T	T	D	L	E	K
Population 10	N	I	S	V	M	A	Y	I	D	C	I	H	V	E	T	T	D	L	E	K
Population 11	N	I	P	V	M	A	Y	I	D	C	M	H	V	E	T	T	D	L	E	K
C. resedifolia	N	I	P	V	M	A	Y	V	D	C	I	H	V	E	T	T	N	L	D	T
A. thaliana	D	I	P	V	M	A	Y	V	D	C	I	N	V	E	T	T	N	L	D	T
I. nil	P	I	P	V	M	A	F	V	—	Y	V	N	F	D	A	M	N	I	T	S
V. vinifera	T	I	A	V	M	A	F	V	—	Y	I	N	F	E	A	I	N	L	D	Q
S. lycopersicum	K	I	P	V	T	A	F	V	—	Y	I	N	F	E	V	M	N	L	N	K
PHYB (A. thaliana)	K	I	P	V	M	A	F	V	—	F	I	N	F	Q	A	M	S	V	S	A

Sites that were conserved across taxa are in italic type. The names of haplotypes are represented by populations in which the haplotypes were found.