Table 3.
Structural comparison of selected HMG boxes
| PDB | Protein | RMSD (Å) | Method |
|---|---|---|---|
| 2HDZ | UBF box 5 | 1.35 | X-Ray |
| 1J3C | HMGB2 box B | 1.40 | NMR |
| 1QRV | HMGD/DNA | 1.49 | X-Ray |
| 2LEF | LEF1/DNA | 1.50 | NMR |
| 1CKT | HMGB1 box A/DNA | 1.87 | X-Ray |
| 1J3X | HMGB2 box A | 2.04 | NMR |
| 1HMF | HMGB1 box B | 2.23 | NMR |
| 2YUL | SOX17 | 2.28 | NMR |
| 2YQI | HMGB3 box B | 2.33 | NMR |
| 2EZQ | HMGB3 box A | 2.36 | NMR |
| 1V63 | UBF box 6 | 2.38 | NMR |
| 1AAB | HMGB1 box A | 2.53 | NMR |
| 1GTO | SOX2/DNA | 2.93 | X-Ray |
| 1V64 | UBF box 3 | 3.10 | NMR |
| 1K99 | UBF box 1 | 3.13 | NMR |
| 1HRY | SRY/DNA | 3.73 | NMR |
| 1WGF | UBF box 4 | 5.42 | NMR |