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. Author manuscript; available in PMC: 2009 Jun 7.
Published in final edited form as: J Mol Biol. 2008 Oct 30;385(2):665–674. doi: 10.1016/j.jmb.2008.10.064

Table 1.

The test set used to evaluate all coarse-grained dynamics methods

Protein Data Bank ID (chain)
rmsd (Å)
Name Residues Initial Intermediate Final (AB) (BC) (AC)
5′-NT 525 1OID (A) 1OI8 (B) 1HPU (D) 5.42 4.72 9.33
Ca2+-ATPase 994 1SU4 (A) 1VFP (A) 1IWO (A) 13.75 10.10 13.97
Myosin 837 1QVI (A) 1KK7 (A) 1KK8 (A) 16.56 12.01 27.32
RBP 271 1BA2 (A) 1URP (D) 2DRI (A) 2.22 4.20 6.19
RNase III 437 1YYO (AB) 1YZ9 (AB) 1YYW (AB) 7.26 13.15 17.47