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. Author manuscript; available in PMC: 2009 Jun 8.
Published in final edited form as: J Mol Biol. 2005 Jan 16;346(4):1173–1188. doi: 10.1016/j.jmb.2004.12.032

Table 2.

Contributions to Best-of-All method

Total SSAP STRUCTAL DALI LSQMAN CE SSM
GSAS≤5 Å 275,547 (100%) 832 (0.3%) 189,871 (69%) 5868 (2.1%) 54,606 (20%) 24,370 (8.8%) –
SAS≤5 Å 539,755 (100%) 498 (0.09%) 286,972 (53%) 15,648 (2.9%) 103,408 (19.2%) 15,844 (2.9%) 117,385 (21.8%)
SI≤5 Å 978,531 (100%) 3745 (0.4%) 497,330 (51%) 24,767 (2.5%) 201,202 (21%) 17,142 (1.8%) 234,345 (24%)
MI≤0.8 880,503 (100%) 4579 (0.5%) 573,542 (65%) 31,402 (3.6%) 63,088 (7.2%) 72,974 (8.3%) 134,918 (15.3%)

The absolute number of alignments contributed by each method is listed and the percentage of alignments is given in parentheses. The largest contributor is shown in bold.