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. Author manuscript; available in PMC: 2009 Jun 8.
Published in final edited form as: J Mol Biol. 2005 Jan 16;346(4):1173–1188. doi: 10.1016/j.jmb.2004.12.032

Table 5.

Total running time of each program on all pairs

Program CPU hours Relative to SSM
SSAP 9042 14.3
STRCUTAL 1906 3.0
DALI 4515 7.1
LSQMAN 1790 2.8
CE 2642 4.2
SSM 633 1.00

Time is measured in CPU hours on an Intel Xeon 2.8 GHz processor with 512 Mbytes of RAM memory. There are 8,581,970 pairs in all (2930×2929).