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. Author manuscript; available in PMC: 2009 Jun 8.
Published in final edited form as: Cell Res. 2008 Jan;18(1):27–47. doi: 10.1038/cr.2008.8

Table 2.

Comparative Properties of Mammalian DNA Glycosylases for Oxidized Bases

Properties Nth Type Nei Type
OGG1 NTH1 NEIL1 NEIL2
Size (kD) 38 36 43 36
DNA structure dsDNA dsDNA ssDNA; Bubble, Fork, and dsDNA ssDNA; Bubble, Fork, and dsDNA
Downstream Enzyme APE1 APE1 PNK PNK
Conserved motif HhH HhH H2TH H2TH
Catalytic residue Lys 249 Lys 212 Pro1 Pro1
Cell Cycle Dependence None None S-phase Specific None
Dispensable Sequences C-terminal 20 & N-terminal 10 residues N-terminal 80 residues C-terminal 101 residues C-terminal 10 residues
AP lyase β-elimination (3′ PUA) βδ-elimination (3′ phosphate)

ds, double stranded; ss, single-stranded; HhH, helix-hairpin-helix; H2TH, helix-2-turn-helix.