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Coverage and confidence of identified peptides for the alternative strategies; peptide counts for composite decoy searches are corrected according to eq. 11
| Strategy | AMT tag | APMF | PMTF |
|---|---|---|---|
| #peptides found with regular database |
5180 | 3577 | 3387 |
| #peptides, composite decoy database, corrected |
5159 | 3507 | 3337 |
| # decoy peptides: Ndecoy | 144 | 11 | 1 |
| FDR from histogram areas: FDRA | 0.020 | 0.0027 | 0.00072 |
| FDR based on Ndecoy : FDRD | 0.028 | 0.0031 | 0.00030 |
