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. Author manuscript; available in PMC: 2010 Apr 23.
Published in final edited form as: J Phys Chem A. 2009 Apr 23;113(16):4045–4059. doi: 10.1021/jp810375d

Table 1.

Parameter values for the linker-histone inclusive mesoscale oligonucleosome model.

Parameter Description Value
l0 Equilibrium DNA segment length 3.0 nm
Lp Persistence length of DNA 50 nm
h Stretching constant of DNA 100 kBT/l02
g Bending constant of DNA LpkBT/l0
s Torsional rigidity constant of DNA 3.0 × 10-12 erg.nm
θ0 Angular separation between linker segments at core 108°
2w0 Width of wound DNA supercoil 3.6 nm
r0 Radius of wound DNA supercoil 4.8 nm
htc Stretching constant for tail bead attached to core h
σtt Excluded volume distance (EVD) for tail/tail interactions 1.8 nm
σtc EVD for tail/core interactions 1.8 nm
σcc EVD for core/core interactions 1.2 nm
σtl EVD for tail/linker interactions 2.7 nm
σcl EVD for core/linker interactions 2.4 nm
σgLHc EVD for globular linker histone bead/core interactions 2.4 nm
σgLHl EVD for globular linker histone bead/linker interactions 3.6 nm
σcLHc EVD for C-terminal linker histone bead/core interactions 2.2 nm
σcLHl EVD for C-terminal linker histone bead/linker interactions 3.4 nm
kev Excluded volume interaction energy parameter 0.001 kBT
kevt Tail/tail excluded volume interaction energy parameter 0.1kBT
ql Charge on linker DNA bead at 0.15 M monovalent salt -24.1e
ql Charge on linker DNA bead at 0.01 M monovalent salt -7.5e
qgLH Charge on globular linker histone bead at 0.15 M monovalent salt 12.4e
qcLH Charge on C-term linker histone bead at 0.15 M monovalent salt 29.9e
ε Dielectric constant of solvent 80