l0 |
Equilibrium DNA segment length |
3.0 nm |
Lp |
Persistence length of DNA |
50 nm |
h |
Stretching constant of DNA |
100 kBT/
|
g |
Bending constant of DNA |
LpkBT/l0 |
s |
Torsional rigidity constant of DNA |
3.0 × 10-12 erg.nm |
θ0
|
Angular separation between linker segments at core |
108° |
2w0
|
Width of wound DNA supercoil |
3.6 nm |
r0
|
Radius of wound DNA supercoil |
4.8 nm |
htc |
Stretching constant for tail bead attached to core |
h |
σtt
|
Excluded volume distance (EVD) for tail/tail interactions |
1.8 nm |
σtc
|
EVD for tail/core interactions |
1.8 nm |
σcc
|
EVD for core/core interactions |
1.2 nm |
σtl
|
EVD for tail/linker interactions |
2.7 nm |
σcl
|
EVD for core/linker interactions |
2.4 nm |
σgLHc
|
EVD for globular linker histone bead/core interactions |
2.4 nm |
σgLHl
|
EVD for globular linker histone bead/linker interactions |
3.6 nm |
σcLHc
|
EVD for C-terminal linker histone bead/core interactions |
2.2 nm |
σcLHl
|
EVD for C-terminal linker histone bead/linker interactions |
3.4 nm |
kev |
Excluded volume interaction energy parameter |
0.001 kBT
|
kevt |
Tail/tail excluded volume interaction energy parameter |
0.1kBT
|
ql |
Charge on linker DNA bead at 0.15 M monovalent salt |
-24.1e |
ql |
Charge on linker DNA bead at 0.01 M monovalent salt |
-7.5e |
qgLH |
Charge on globular linker histone bead at 0.15 M monovalent salt |
12.4e |
qcLH |
Charge on C-term linker histone bead at 0.15 M monovalent salt |
29.9e |
ε |
Dielectric constant of solvent |
80 |