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. 2009 May 11;9:53. doi: 10.1186/1471-2229-9-53

Table 2.

List of 61 UGMS markers identified in a total of 60 unigenes showing the motif of the repeats unit and annotation of the unigenes as defined by best match Arabidopsis protein

Unigene ID UGMS markers Repeat motif Arabidopsis Proteome hit
TUG1 TUGMS1 (TA)13 No hit
TUG3 TUGMS3 (TC)10 At5g25360-expressed protein; 1e-29
TUG4 TUGMS4 (TC)11(CA)11 At5g59320-Lipid transfer protein; 6e-24
TUG7 TUGMS7 (GA)19 No hit
TUG11 TUGMS11 (GA)22 At1g51650-Hydrogen ion transporting ATP synthase activity; 4e-31
TUG12 TUGMS12 (TA)22 At1g06680-calcium ion binding; 1e-20
TUG13 TUGMS13 (TG)32(TC)24 At5g26740-molecular function unknown; 1e-24
TUG15 TUGMS15 (GA)14 At5g10390-DNA binding; 1e-60
TUG17 TUGMS17 (TC)25 At3g22110-Ubiquitin-dependent protein; 5e-34
TUG18 TUGMS18 (GA)10 At4g05320-protein modification; 8e-39
TUG20 TUGMS20 (TC)24 At5g23860-Tubulin beta 8 chain; 2e-84
TUG22 TUGMS22 (GA)13 At2g14900-Gibberellin-regulated protein; 1e-05
TUG23 TUGMS23 (TC)13 At4g32130-UPF0480 family; 7e-42
TUG24 TUGMS24 (TC)11 At5g10390-histone H3 protein; 7e-40
TUG27 TUGMS27 (GA)20 At1g05010-1-amino cyclopropane-1-carboxylate oxidase; 7e-41
TUG28 TUGMS28 (TG)12(GA)13 At4g00165-lipid transport protein; 1e-30
TUG29 TUGMS29 (TC)20 At4g14420-Elicitor protein; 8e-10
TUG31 TUGMS31B (TC)9 At1g33140-60S ribosomal protein; 8e-49
TUG33 TUGMS33 (GA)10 No hit
TUG34 TUGMS34 (TTC)18(GA)10 At4g25890-60S acidic ribosomal protein P3-1; 4e-13
TUG35 TUGMS35 (TC)11 At2g44650-Cholorplast chaperonin 10;; 3e-46
TUG36 TUGMS36 (GA)13 No hit
TUG41 TUGMS41 (GA)11 No hit
TUG42 TUGMS42 (GA)23(GA)11 No hit
TUG43 TUGMS43A (GA)11 At2g18020-60S ribosomal protein; e-129
TUG44 TUGMS44 (GA)12 No hit
TUG45 TUGMS45 (GA)20 No hit
TUG46 TUGMS46 (TC)13 At4g10480-Alpha NAC putative; 1e-31
TUG48 TUGMS48 (GA)14 At1g19150-PSI type II chlorophyll a/b-binding protein, putative; 1e-10
TUG50 TUGMS50 (TC)11 At2g38140-30S ribosomal protein S31 choloroplast; 2e-07
TUG51 TUGMS51 (GA)11 At4g24820-26S proteosome non-ATPase regulatory subunit 6 probable; 3e-59
TUG52 TUGMS52 (GA)14 No hit
TUG58 TUGMS58A (TCC)14 No hit
TUGMS58B (TCG)28
TUG59 TUGMS59 (TGG)9 At3g49050-Calmodulin binding heat shock protein.; 2e-31
TUG63 TUGMS63 (CCG)6 At4g13940-Adenosylhomocysteinase 4e-29
TUG64 TUGMS64 (CAG)9 At3g26650-Glyceraldehyde-3-phosphate dehydrogenase A choloroplast precursor; 5e-38
TUG66 TUGMS66 (TTA)8 At5g03455-Dual specificity phosphatase cdc 25; 3e-17
TUG70 TUGMS70 (CAA)15 At4g34530-bHLH transcription factor; 3e-17
TUG71 TUGMS71 (GAA)8 At5g21430-DnaJ domain family; 5e-43
TUG72 TUGMS72 (ATG)10 At5g57660-Zinc finger protein; 7e-23
TUG73 TUGMS73 (TAA)12 No hit
TUG74 TUGMS74 (CCA)9 No hit
TUG75 TUGMS75 (ATG)9 No hit
TUG76 TUGMS76 (GAA)10 No hit
TUG77 TUGMS77 (CAA)10 No hit
TUG78 TUGMS78 (TCC)13 No hit
TUG79 TUGMS79 (CCA)11 At2g35960-hairpin induced protein putative; 1e-27
TUG82 TUGMS82 (CAT)8 At28750-Photosystem I subunit putative; 8e-09
TUG83 TUGMS83 (TGG)9 At4g13850-Glycine rich RNA binding protein 6e-34
TUG84 TUGMS84 (ATG)34 No hit
TUG85 TUGMS85 (GAA)11 No hit
TUG87 TUGMS87 (GAA)6 No hit
TUG90 TUGMS90 (TTTG)6 No hit
TUG92 TUGMS92 (TTTC)13 At1g49410-mitochondrial import receptor subunit TOM6 homolog; 2e-08
TUG95 TUGMS95 (CAAA)6 No hit
TUG98 TUGMS98 (TTGTG)8 No hit
TUG99 TUGMS99 (GGGAGA)7(GAGAA)6 At5g01650-light inducible protein; 1e-49
TUG102 TUGMS102A (GGAAA)12(GA)11 No hit
TUG105 TUGMS105 (TTCTC)5 No hit
TUG108 TUGMS108 (CAAAAA)6 At1909310-expressed; 7e-11