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. 2009 May 13;9:30. doi: 10.1186/1472-6807-9-30

Table 2.

Propensity of dinucleotide steps in major and minor groove (most significant residues)

Groove Step H K N Q R Y
Major AA/TT 1.23 0.64 5.41 3.80 2.21 1.18
AC/GT 2.71 1.09 2.90 1.21 4.14 1.03
AG/CT 1.72 1.92 2.54 3.21 2.92 1.48
AT/AT 2.32 0.65 4.95 1.85 2.55 2.10
CA/TG 1.35 0.26 2.58 0.56 3.40 1.50
CC/GG 3.66 1.09 1.49 1.00 4.17 0.77
CG/CG 1.90 1.78 0.46 2.08 5.36 1.10
GA/TC 2.58 2.83 1.03 0.80 5.14 0.38
GC/GC 2.34 3.03 1.32 1.08 5.03 0.70
TA/TA 2.26 0.00 6.48 4.72 0.72 3.19
Minor AA/TT 1.28 1.32 0.45 0.42 8.15 0.00
AC/GT 1.92 1.97 0.00 0.94 3.53 3.17
AG/CT 0.00 0.63 2.64 1.86 3.00 1.79
AT/AT 0.52 1.51 2.66 0.30 3.75 2.38
CA/TG 0.00 1.13 1.38 1.33 5.79 1.80
CC/GG 1.91 1.80 2.35 1.49 3.39 2.27
CG/CG 0.00 2.19 2.41 2.73 2.25 2.38
GA/TC 0.00 1.26 0.75 2.38 3.62 0.00
GC/GC 0.00 2.56 1.35 1.92 2.67 1.23
TA/TA 0.00 3.88 0.00 0.00 4.94 3.65