Table 3.

Monte Carlo Markov chain Logic regression analysis

Two-way interactions K=3 trees, a=1/√2					Three-way interactions K=3 trees, a=1/√2
Variant 1	Variant 2	Observed frequency	Expected frequency	Ratio	Variant 1	Variant 2	Variant 3	Observed frequency
MMP3 rs3025058d	PON1 rs854560r	0.00846	0.00350	2.42	APOA4 rs5110r	MMP3 rs3025058d	PON1 rs854560r	0.0082
ITGA2 rs1062535d	CCR2 rs1799864r	0.00564	0.00002	282.00	CETP rs708272r	MMP3 rs3025058d	PON1 rs854560r	0.0071
ADRB3 rs4994d	TNF rs361525d	0.00545	0.00016	34.06	IL4R rs1801275r	MMP3 rs3025058r	GC rs7041r	0.0060
CETP rs708272r	MMP3 rs3025058d	0.00536	0.00130	4.12	TCF7 rs5742913r	GC rs7041r	CCR5 rs1799987r	0.0059
MMP3 rs3025058d	IL1A rs1800587r	0.00517	0.00151	3.42	CETP rs708272r	APOA4 rs5110r	MMP3 rs3025058d	0.0051

d, dominant model; r, recessive model; Freq, frequency.