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. 2009 May 20;2:28. doi: 10.1186/1755-8794-2-28

Table 1.

Functional profiling, positively correlated genes

Functional group Gene set name No. of related sets No of members in gene set
(range)
FDR q value
(range)
Vesicle trafficking Membrane fusion 2 27–52 0.022–0.026
Vesicle transport 9 16–348 0.002–0.149
Vesicle docking during exocytosis 1 21 0.141

Transcription/translation Ribosome function 4 69–89 0.042–0.179
mRNA processing 5 157–452 0.056–0.166
Transcription from RNA pol III promoter 1 25 0.089
mRNA catabolism 2 17–23 0.027–0.125
translation 3 30–157 0.012–0.062

Protein transport/metabolism Protein transport 9 17–294 0.012–0.129
Ubiquination/proteolysis 11 133–448 0.013–0.024
Protein folding 1 195 0.003
Carboxylic acid metabolism 7 17–410 0.087–0.195
Aspartate family amino acid metabolism 1 18 0.016
Amine metabolism 2 55–57 0.142–0.152

Electron transport chain Coenzyme metabolism 4 85–159 0.007–0.029
Nucleotide metabolism 16 53–178 0.014–0.126
ATP metabolism 9 36–490 0.012–0.192
Oxidative phosphorylation 4 21–63 <0.001
Electron transport 1 289 0.022
Mitochondrial membrane 2 19–21 0.027–0.149

Glycolysis Aerobic respiration 7 22–32 0.005–0.016
Glucose metabolism 13 20–138 0.005–0.079

Oxidative stress Response to oxidative stress 2 44–63 0.069–0.164
Peroxisome organization and biogenesis 1 17 0.164

Cell cycle Mitotic cell cycle 5 17–60 0.077–0.144
Induction of apoptosis by intracellular signals 1 20 0.067

Lipid metabolism Sphingomyelin synthesis 3 17–41 0.035–0.187
Lipid modification 2 15–19 0.032–0.041
Phospholipid metabolism 6 54–427 0.012–0.054
Lipoprotein metabolism 3 29–42 0.027–0.069
Glycerolipid metabolism 6 19–39 0.013–0.180

Others Iron compound metabolism 6 15–52 0.002–0.053
Autophagy 1 16 0.062
Polysaccharide biosynthesis 1 18 0.120
Biopolymer biosynthesis 1 18 0.128
Telomere maintenance 1 21 0.132
Respiratory gaseous exchange 1 17 0.188
Regulation of Wnt receptor signalling 1 15 0.188
Vitamin metabolism 1 48 0.188

Functional gene sets are shown which show enrichment in the list of genes positively correlated with a template showing peak expression in the 15–25 age range. Related gene sets as defined by leading edge analysis are grouped together in column 2 and the range of q values for these gene sets is indicated. Gene sets/groups of gene sets which are functionally associated but are composed of non-overlapping genes in the leading edge are indicated by headings in column 1. A full detailed list of significant gene sets can be found in Additional File 3.