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. 2009 Jun 26;5(6):e1000415. doi: 10.1371/journal.pcbi.1000415

Figure 3. Free energy basins of the Alanine dipeptide.

Figure 3

(A) The dialanine dipeptide with the angles Inline graphic and Inline graphic. (B) Plot of the CMN generated. The 6 sets of nodes (corresponding to different colors) are the result of the SSD algorithm. (C) Left: Ramachandran plot with the probability of occupation of the cells used to build the CMN. The boundaries of the free energy basins are shown in white. Right: the 6 basins represented as regions of different color. (Color code: Inline graphic, Inline graphic, Inline graphic, Inline graphic, Inline graphic and Inline graphic).