Table 1.

Technologies and data formats supported by MIMAS 3.0.

Technology	Raw data format	Processed data format
Affymetrix GeneChips	Affymetrix CEL file (GCOS versions 3 or 4 or CCG version 1)	Tabular (Affymetrix MAS/GCOS versions 4 or 5, GEO MAS, GEO Series Matrix)
Affymetrix All-Exon Arrays
Affymetrix Tiling Arrays
Affymetrix Promoter arrays
Affymetrix SNP arrays
Affymetrix Gene Arrays
Illumina BeadArrays	Tabular (Illumina BeadStudio ArrayExpress-format output plug-in)
Illumina miRNA arrays
Illumina Genome Analyzer		GFF 3