Table 2.

Example KISSa alignments. Number of differences refers to the total number of insertions and deletions in all sequences.

Genotypes	# of Seqs	Time for KISSa MSA (secs)	Number of differences
DENV 1	528	3.970	8 deletions, 4 insertions
DENV 2	558	0.284	3 deletions
DENV 3	236	0.697	1 insertion
DENV 4	31	0.164	3 deletions
DENV 1,2	1086	10.607	1127 deletions, 562 insertions
DENV 1,2,3	1322	20.289	1599 deletions, 1035 insertions
DENV 1,2,3,4	1354	25.022	1755 deletions, 1129 insertions