Table 5.
Summary of taurine haplotypes at aberrant sites for each amplicon determined from Hereford sequence and the species sharing the same haplotype (*).
|
Gene_Amplicon (Taurine Haplotype) |
Chromosome | Gaur | Mithan | Banteng | Bison | Yak |
|
NRIP1_e1.2 (G) |
bta01 | * | * | * | * | |
|
NRIP1_e1.3 (T) |
bta01 | * | * | * | * | |
|
PIT1_e1 (T) |
bta01 | * | * | * | * | |
|
PIT1_e3 (T) |
bta01 | * | * | * | ||
|
PIT1_e5 (C) |
bta01 | * | * | * | * | |
|
PIT1_e6 (ACAGTGAACTCCTAG) |
bta01 | * | ||||
|
ITGBP5_e3 (GG) |
bta01 | * | ||||
|
ITGBP5_e5 (ATAGAC) |
bta01 | * | ||||
|
ITGBP5_e6 (CGTG) |
bta01 | * | * | |||
|
ITGBP5_e10 (CG) |
bta01 | * | * | |||
|
5HT1F_e1 (T) |
bta01 | * | * | |||
|
IGFBP2_e1 (AT) |
bta02 | * | ||||
|
IGFBP5_e2 (CGG) |
bta02 | * | ||||
|
IGFBP5_e3 (ACGGCC) |
bta02 | * | ||||
|
HFABP_e2 (GTTC) |
bta02 | * | ||||
|
HFABP_e3 (TGTA) |
bta02 | * | ||||
|
LACS3_e1 (T) |
bta02 | * | ||||
|
LACS3_e3 (T) |
bta02 | * | ||||
|
LACS3_e4 (C) |
bta02 | * | * | |||
|
LACS3_e6 (CA) |
bta02 | * | ||||
|
5HT6_e1.2 (TGTGCA) |
bta02 | * | ||||
|
GMEB1_e1 (AC) |
bta02 | * | ||||
|
GMEB1_e3 (CCGG) |
bta02 | * | * | |||
|
GMEB1_e4 (A) |
bta02 | * | ||||
|
GMEB1_e5 (AC) |
bta02 | * | ||||
|
GMEB1_e6 (G) |
bta02 | * | * | |||
|
GMEB1_e7 (TA) |
bta02 | * | * | * | ||
|
GMEB1_e8 (CT) |
bta02 | * | * | * | ||
|
EGF_e1 (TTA) |
bta06 | * | ||||
|
ERa_e3 (A) |
bta09 | * | * | |||
|
ERa_e4 (C) |
bta09 | * | ||||
|
ERa_e5 (AC) |
bta09 | * | ||||
|
ERa_e6 (T) |
bta09 | * | * | |||
|
ERa_e7 (TGA) |
bta09 | * | ||||
|
PABPC1_e2 (AC) |
bta14 | * | ||||
|
PABPC1_e3 (TTTGCG) |
bta14 | * | ||||
|
PABPC1_e5 (GG) |
bta14 | * | ||||
|
PABPC1_e9 (CCCACGCACTAGACAGCG) |
bta14 | * | ||||
|
MFGE8_e2 (CCCTT) |
bta21 | * | ||||
|
MFGE8_e3 (ATC) |
bta21 | * | ||||
|
MFGE8_e5 (TCCA) |
bta21 | * | * |
*Number of exons represented as e(n) where e = exon and n = number, therefore, PIT1_e1 is exon 1 of PIT1. Exons that extend over the largest sequencing read, which is typically 800 bp are represented as e(n.j) where j equals order of read from 5-prime to 3-prime. Therefore NRIP_e1.1 and NRIP_e1.2 represent two subsequent reads of the l
The number of aberrant alleles making each haplotype are given in brackets as the (taurine haplotype). Table displays haplotype blocks shared with Hereford and 5 members of the Bovinae for exons within the each gene and for genes on the same chromosome.