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. 2009 Jan 27;40(3):19. doi: 10.1051/vetres/2009002

Table II.

Primers and probe sequences used in the four different allelic discrimination assays were designed using GenBank M31313.

PCR mixture Primer MGB-probe AA
Codon 136 136F: 5′-CTGCAGCTGGAGCAGTGGTA-3′ 136Ala: 5′FAM-TCRTGgCACTTCC-3′ (300 nM) Ala
136R: 5′-GATAGTAACGGTCCTCATAGTCATTGC-3′ 136Val: 5′VIC-CTCATGaCACTTCC-3′(200 nM) Val
Codon 154 154F: 5′TGGCAATGACTATGAGGACCG-3′ 154Arg: 5′FAM-ACTATCgTGAAAACAT-3′(120 nM) Arg
154R: 5′-TGGTCTGTAGTACACTTGGTTGGG-3′ 154His: 5′VIC-TACTATCaTGAAAACATG-3′(200 nM) His
Codon 171-1 171F: 5′-GTTACCCCAACCAAGTGTACTACAGA-3′ 171Arg: 5′FAM-CCAGTGGATCgGTATA-3′(150 nM) Arg
171R: 5′-TGTTGACACAGTCATGCACAAAG-3′ 171His: 5′-ACCAGTGGATCa TTAT-3′(120 nM) His
Codon 171-2 171F: 5′-GTTACCCCAACCAAGTGTACTACAGA-3′ 171Arg: 5′FAM-CCAGTGGATCgGTATA-VIC (150 nM) Arg
171R: 5′-TGTTGACACAGTCATGCACAAAG-3′ 171Gln: 5′VIC-ACCAGTGGATCaGTATA-3′ (200 nM) Gln