Table 2.
Summary of the linkage map.
| Markers | ||||||||
| Chromosome | SNPs | Microsats | Total | Map distance (cM) | Physical coverage (Mb)1 | Chr. length (Mb)2 | %Coverage | cM/Mb |
| 1 | 58 | 16 | 74 | 497.2 | 196.0 | 201.0 | 97.5 | 2.5 |
| 2 | 42 | 16 | 58 | 332.8 | 152.5 | 154.9 | 98.0 | 2.2 |
| 3 | 23 | 9 | 32 | 262.5 | 104.7 | 113.7 | 92.1 | 2.5 |
| 4 | 25 | 11 | 36 | 210.6 | 90.7 | 94.2 | 96.3 | 2.3 |
| 5 | 17 | 6 | 23 | 164.1 | 59.7 | 62.2 | 96.0 | 2.6 |
| 6 | 8 | 5 | 13 | 69.7 | 29.6 | 37.4 | 79.1 | 2.4 |
| 7 | 13 | 4 | 17 | 120.3 | 36.5 | 38.4 | 95.1 | 3.3 |
| 8 | 7 | 3 | 10 | 100.2 | 26.1 | 30.7 | 85.0 | 3.8 |
| 9 | 7 | 4 | 11 | 135.5 | 23.1 | 25.6 | 90.2 | 5.9 |
| 10 | 7 | 7 | 14 | 84.3 | 20.7 | 22.6 | 92.0 | 4.1 |
| 11 | 8 | 3 | 11 | 68.5 | 19.7 | 21.9 | 90.0 | 3.5 |
| 12 | 7 | 4 | 11 | 81.7 | 18.0 | 20.5 | 87.8 | 4.5 |
| 13 | 8 | 5 | 13 | 73.9 | 17.7 | 18.9 | 93.7 | 4.2 |
| 14 | 4 | 3 | 7 | 74.5 | 14.7 | 15.8 | 93.0 | 5.1 |
| 15 | 6 | 3 | 9 | 53.1 | 10.0 | 13.0 | 77.0 | 5.3 |
| 16_13 | 1 | - | - | - | - | - | - | - |
| 16_23 | 2 | - | - | - | - | - | - | - |
| 17 | 6 | 2 | 8 | 54.8 | 9.4 | 11.2 | 84.0 | 5.8 |
| 18 | 5 | 2 | 7 | 45.1 | 8.0 | 10.9 | 73.4 | 5.6 |
| 19 | 8 | - | 8 | 46.7 | 8.7 | 9.9 | 87.9 | 5.4 |
| 20 | 10 | 2 | 12 | 71.7 | 13.5 | 14.0 | 96.4 | 5.3 |
| 21 | 6 | - | 6 | 61.4 | 6.2 | 7.0 | 88.6 | 9.9 |
| 22 | 2 | - | 2 | 2.7 | 0.4 | 3.9 | 10.3 | 6.8 |
| 23 | 5 | - | 5 | 49.6 | 5.4 | 6.0 | 93.3 | 9.2 |
| 24 | 5 | 2 | 7 | 51.3 | 5.6 | 6.4 | 86.9 | 9.2 |
| 25 | 6 | - | 6 | 53.1 | 1.9 | 2.0 | 93.6 | 27.9 |
| 26 | 4 | 4 | 8 | 52.8 | 4.3 | 5.1 | 84.3 | 12.3 |
| 27 | 6 | 3 | 9 | 59.1 | 3.8 | 4.8 | 79.2 | 15.6 |
| 28 | 4 | 1 | 5 | 51.7 | 3.4 | 4.5 | 75.6 | 15.2 |
| LG14 | 5 | 2 | 7 | 25.5 | - | - | - | - |
| GCT0045 | - | 1 | 1 | - | - | - | - | - |
| rs167487755 | 1 | - | 1 | - | - | - | - | - |
| Total | 316 | 118 | 434 | 2954.4 | 890.3 | 956.5 | 93.0 | 3.3 |
1Physical coverage as measured between the first and last marker on the chromosome (May 2006 assembly).
2 Total length of the chromosome according to May 2006 assembly.
3 SNP markers that have been assigned to chromosome 16, however, they do not show linkage to each other.
4 LG1 represents linkage group E22C19W28E50C23, a linkage group that to date has not been assigned to a chromosome.
5 GCT004 and rs16748775 denote markers that did not show linkage to any other marker in the dataset.
The map length in cM and the physical coverage in Mb are given for each chromosome.