Table 10.
Stepwise context reduction for the nuclear SSU rRNA dataset using the graph-based approach.
| Model | Contexts | Annealing | Melting | log BF |
| GTR16C | 16 (96) | [-21.25; -15.74] | [-19.29; -14.31] | -17.65 |
| GTR15C | 15 (90) | [-17.17; -13.45] | [-14.19; -10.30] | -13.78 |
| GTR14C | 14 (84) | [-14.05; -10.21] | [-10.09; -5.13] | -9.87 |
| GTR13C | 13 (78) | [-7.29; -4.07] | [-8.00; -3.25] | -5.65 |
| GTR12C | 12 (72) | [-2.61; 1.25] | [-0.71; 3.31] | 0.31 |
| GTR11C | 11 (66) | [1.75; 5.55] | [6.05; 9.25] | 5.65 |
| GTR10C | 10 (60) | [3.50; 7.11] | [5.53; 10.37] | 6.63 |
| GTR9C | 9 (54) | [2.79; 6.32] | [8.24; 12.51] | 7.47 |
| GTR8C | 8 (48) | [8.43; 12.07] | [10.37; 13.48] | 11.09 |
| GTR7C | 7 (42) | [4.21; 7.25] | [9.53; 13.04] | 8.51 |
| GTR6C | 6 (36) | [11.71; 14.99] | [12.83; 17.55] | 14.27 |
| GTR5C | 5 (30) | [8.97; 12.70] | [10.10; 14.86] | 11.66 |
| GTR4C | 4 (24) | [11.44; 15.02] | [12.18; 16.35] | 13.75 |
| GTR3C | 3 (18) | [15.30; 17.92] | [14.86; 18.11] | 16.55 |
| GTR2C | 2 (12) | [-1.61; 2.74] | [1.04; 5.31] | 1.87 |
| GTR | 1 (6) | - | - | 0 |
The stepwise context reduction using the graph-based clustering approach reveals an optimal model with 3 clusters for the nuclear SSU rRNA dataset (GTR3C). It attains a log Bayes Factor of 16.55 (as compared to GTR1C), a significant improvement over the full context-dependent model (GTR16C).