Table 1. Primers used for cDNA and genomic PCR and Southern blot probe synthesis.
Opsin category | Primer Name | Sequence |
SWS1 | SWS1Fw1 | 5′- AACTACATCYTGGTMAACATCTCC-3′ |
SWS1Fw2 | 5′- TGGGCSTTCYACCTGCAGGC -3′ | |
SWS1Rev1 | 5′- GAGTAGGAGAARATGATGATGG-3′ | |
SWS1Rev2 | 5′-GAACTGTTTGTTCATGAAGGCG-3′ | |
SWS2 | SWS2Fw1 | 5′-GYACWATTCAATACAAGAARC-3′ |
SWS2Fw3 | 5′-AGCCTTTGGTCTCTGGCTGTG-3′ | |
SWS2Rev1 | 5′-AAAGCARAAGCAGAAGAGGAAC-3′ | |
SWS2Rev4 | 5′-CCCGTTGTGTACCAGTCTGG-3′ | |
SWS2AFw1 | 5′-GTCCACCCGAGTCATAGAGC-3′ | |
SWS2ARev2 | 5′-GCCCACGGTTGTTGACAAC-3′ | |
SWS2-2Fw2 | 5′-TCTACACCATGGCTGGATTCAC-3′ | |
SWS2-2Rev1 | 5′-GATGGTGGTGAATGGAACAGC-3′ | |
RH2 | RH2Fw1 | 5′- AACTTCTAYATCCCGWTGTCC-3′ |
RH2Fw2 | 5′-TGHTCTTCCTGATCTKCACTGG-3′ | |
RH2Rev2 | 5′-GTCTCRTCCTCCACCATGC-3′ | |
RH2Rev4 | 5′- TGCGGCATGAGTTCCAGTG-3′ | |
RH2-2Fw1 | 5′-CAACAGGACGGGCTGGTGAGG-3′ | |
RH2-2Rev3 | 5′-ACCCATTCCAATTGTTGCC-3′ | |
RH1 | RH1Fw1 | 5′-ATGAACGGCACAGAGGGACC-3′ |
RH1Fw4 | 5′-GCAGTGCTCATGCGGAGTC-3′ | |
RH1Rev2 | 5′-CCTGTTGCTCCATTTATGCAGG-3′ | |
RH1Rev4 | 5′-GCTGGAGGACACAGAAGAGG-3′ | |
LWS | Fw100 | 5′-GATCCCTTTGAAGGACCAAACT-3′ |
Fw1a | 5′-TCTTATCAGTCTTCACCAACGG-3′ | |
Gamma Fw1 | 5′-TGCTATGCAGCAGATAAATTG-3′ | |
RevEnd | 5′-TTATGCAGGAGCCACAGAGG-3′ | |
Rev8 | 5′-GCCCACCTGTCGGTTCATGAAG-3′ | |
RevEx4 | 5′- CTTCCACTGAACACATCAGG-3′ |
Primers were used to amplify sequences from A. anableps cDNA and genomic DNA as well as guppy cDNA.