Table 2.
Linkage disequilibrium of SNPs genotyped from ZNF429.
| L1 | L2 | D′ | LOD | r2 | Cllow | Clhi | Dist | T-int |
|---|---|---|---|---|---|---|---|---|
| rs1984771 | rs2650825 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 7428 | 115.55 |
| rs1520071 | 1.0 | 35.53 | 1.0 | 0.94 | 1.0 | 10243 | – | |
| rs2650757 | 1.0 | 35.53 | 1.0 | 0.94 | 1.0 | 11748 | – | |
| rs2681365 | 1.0 | 35.53 | 1.0 | 0.94 | 1.0 | 12167 | – | |
| rs1879234 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 12682 | – | |
| rs11085455 | 1.0 | 30.89 | 0.921 | 0.91 | 1.0 | 13248 | – | |
| rs2173724 | 1.0 | 35.53 | 1.0 | 0.94 | 1.0 | 17360 | – | |
| rs2133816 | 1.0 | 35.53 | 1.0 | 0.94 | 1.0 | 17584 | – | |
| rs2562408 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 18084 | – | |
| rs2562466 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 22407 | – | |
| rs1520071 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 2815 | 205.86 | |
| rs2650825 | rs2650757 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 4320 | – |
| rs2681365 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 4739 | – | |
| rs1879234 | 1.0 | 46.31 | 1.0 | 0.95 | 1.0 | 5254 | – | |
| rs11085455 | 1.0 | 4.15 | 0.065 | 0.64 | 1.0 | 5820 | – | |
| rs2173724 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 9932 | – | |
| rs2133816 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 10156 | – | |
| rs2562408 | 1.0 | 46.31 | 1.0 | 0.95 | 1.0 | 10656 | – | |
| rs2562466 | 1.0 | 46.31 | 1.0 | 0.95 | 1.0 | 14979 | – | |
| rs1520071 | rs2650757 | 1.0 | 35.53 | 1.0 | 0.94 | 1.0 | 1505 | 347.82 |
| rs2681365 | 1.0 | 35.53 | 1.0 | 0.94 | 1.0 | 1924 | – | |
| rs1879234 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 2439 | – | |
| rs11085455 | 1.0 | 30.89 | 0.921 | 0.91 | 1.0 | 3005 | – | |
| rs2173724 | 1.0 | 35.53 | 1.0 | 0.94 | 1.0 | 7117 | – | |
| rs2133816 | 1.0 | 35.53 | 1.0 | 0.94 | 1.0 | 7341 | – | |
| rs2562408 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 7841 | – | |
| rs2562466 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 12164 | – | |
| rs2650757 | rs2681365 | 1.0 | 35.53 | 1.0 | 0.94 | 1.0 | 419 | 489.78 |
| rs1879234 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 934 | – | |
| rs11085455 | 1.0 | 30.89 | 0.921 | 0.91 | 1.0 | 1500 | – | |
| rs2173724 | 1.0 | 35.53 | 1.0 | 0.94 | 1.0 | 5612 | – | |
| rs2133816 | 1.0 | 35.53 | 1.0 | 0.94 | 1.0 | 5836 | – | |
| rs2562408 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 6336 | – | |
| rs2562466 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 10659 | – | |
| rs2681365 | rs1879234 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 515 | 549.37 |
| rs11085455 | 1.0 | 30.89 | 0.921 | 0.91 | 1.0 | 1081 | – | |
| rs2173724 | 1.0 | 35.53 | 1.0 | 0.94 | 1.0 | 5193 | – | |
| rs2133816 | 1.0 | 35.53 | 1.0 | 0.94 | 1.0 | 5417 | – | |
| rs2562408 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 5917 | – | |
| rs2562466 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 10240 | – | |
| rs1879234 | rs11085455 | 1.0 | 4.15 | 0.065 | 0.64 | 1.0 | 566 | 544.19 |
| rs2173724 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 4678 | – | |
| rs2133816 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 4902 | – | |
| rs2562408 | 1.0 | 46.31 | 1.0 | 0.95 | 1.0 | 5402 | – | |
| rs2562466 | 1.0 | 46.31 | 1.0 | 0.95 | 1.0 | 9725 | – | |
| rs11085455 | rs2173724 | 1.0 | 30.89 | 0.921 | 0.91 | 1.0 | 4112 | 411.72 |
| rs2133816 | 1.0 | 30.89 | 0.921 | 0.91 | 1.0 | 4336 | – | |
| rs2562408 | 1.0 | 4.15 | 0.065 | 0.64 | 1.0 | 4836 | – | |
| rs2562466 | 1.0 | 4.15 | 0.065 | 0.64 | 1.0 | 9159 | – | |
| rs2173724 | rs2133816 | 1.0 | 35.53 | 1.0 | 0.94 | 1.0 | 224 | 269.76 |
| rs2562408 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 724 | – | |
| rs2562466 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 5047 | – | |
| rs2133816 | rs2562408 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 500 | 127.8 |
| rs2562466 | 1.0 | 4.48 | 0.071 | 0.67 | 1.0 | 4823 | – | |
| rs2562408 | rs2562466 | 1.0 | 46.31 | 1.0 | 0.95 | 1.0 | 4323 | 105.73 |
L1: Loci 1; L2: Loci 2; LOD: Log of the likelihood odds ratio, a measure of confidence in the value of D′; CIlow: 95% confidence lower bound on D′; CIhi: 95% confidence upper bound on D′; Dist: Distance (in bases) between loci; T-int: Statistic used by the HapMap Project to measure the completeness of information represented by a set of markers in a region. It measures linkage disequilibrium information content in the gaps between markers.