Table 1.
TCRBV10 sequence | Repertoire in mouse pairs | |||||||
---|---|---|---|---|---|---|---|---|
BJ | NS | CDR3 | No. of cells | % sort | % BJ | No. of cells | % sort | % BJ |
11A | 11B | |||||||
1S1 | 1.1-7a | SRGPEV | 56 | 23.3 | 100 | 0 | 0 | 0 |
1.1-3a | SLGQEV | 0 | 0 | 0 | 59 | 30.7 | 100 | |
1S2 | 1.2-11b | SWGSDY | 24 | 10 | 50 | 0 | 0 | 0 |
1.2-3a | SYGSDY | 16 | 6.7 | 33.3 | 0 | 0 | 0 | |
1.2-9c | SQGSDY | 8 | 3.3 | 16.7 | 4 | 2.1 | 20 | |
1.2-3c | SYGSDY | 0 | 0 | 0 | 16 | 8.3 | 80 | |
1S3 | 1.3-2a | SRGNTL | 12 | 5 | 100 | 1 | 0.5 | 100 |
Proportion amplified: | 116/240 | (48.3%) | 80/192 | (41.7%) | ||||
12A | 12B | |||||||
1S1 | 1.1-4c | SFGTEV | 0 | 0 | 0 | 1 | 0.5 | 100 |
1S2 | 1.2-2m | SLGSDY | 44 | 22.9 | 77 | 51 | 26.0 | 100 |
1.2-35a | SSGQDY | 13 | 6.8 | 23 | 0 | 0 | 0 | |
Proportion amplified: | 57/192 | (29.7%) | 52/192 | (27.1%) | ||||
13A | 13B | |||||||
1S2 | 1.2-73a | SFGASDY | 64 | 33.3 | 74.4 | 5 | 2.6 | 100 |
1.2-21 | SLGSDY | 22 | 11.5 | 25.6 | 0 | 0 | 0 | |
Proportion amplified: | 86/192 | (44.8%) | 5/192 | (2.6%) | ||||
14A | 14B | |||||||
1S2 | 1.2-1h | SRGSDY | 96 | 50 | 97 | 7 | 3.6 | 70 |
1.2-76a | SFGTGENSDY | 3 | 1.6 | 3 | 0 | 0 | 0 | |
1.2-2c | SLGSDY | 0 | 0 | 0 | 3 | 1.6 | 30 | |
1S3 | 1.3-1b | SLGNTL | 3 | 1.6 | 100 | 1 | 0.5 | 100 |
1S4 | 1.4-11a | RPDREPPNERL | 1 | 0.5 | 100 | 0 | 0 | 0 |
1.4-12a | TGTGFSNERL | 0 | 0 | 0 | 10 | 5.2 | 90.9 | |
1.4-9a | SLGQKL | 0 | 0 | 0 | 1 | 0.5 | 9.1 | |
Proportion amplified: | 103/192 | (54.0%) | 22/192 | (11.5%) |
Single VB10+CD62L −CD8+ cells were sorted from PBL of four pairs of single-donor irradiated recipients on day 21 (12A/B and 13A/B) or 26 (pairs 11A/B and 14A/B) after injection of 500 P815-CW3 cells. The TCR VB10 junctional region sequences were determined after a modified single-cell PCR amplification protocol, described in Materials and Methods, which amplifies VB10 TCRs rearranged to either the JB1.1, −1.2, −1.3, or −1.4 gene elements. For each sequence, the number (no. cells) and the corresponding percentage (% sort) of positive PCR products of the total number of cells analyzed is shown, as is the percent of the sequence within the JB class (% BJ). The proportion of cells amplified is calculated for the total cells analyzed. Shared sequences are highlighted in bold type.