Table 2.

Results obtained for M. hyopneumoniae 232 annotation

	All genes	CDS	ncRNA
Total of M. hyopneumoniae 232 known genes	727	691	36
Total annotated genes using pipeline	773	741	32
Total correct predictions *	704	672	32
Total known genes not predicted *	23	19	4
Total correct gene annotations	647	618	29
Total predicted genes incorrectly or differently annotated	57	54	3
Total predicted genes in additionally annotated by pipeline	69	69	0

* CDS were predicted using Glimmer3 and ncRNAs were predicted using Blastn for 23S and 16S rRNAs, tRNAScan-SE for tRNAs and Infernal for other ncRNAs