TABLE 1.
Parameter | No. for strain:
|
||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Newman | TCH1516 | USA300 | Mu3 | JH9 | JH1 | COL | RF122 | Mu50 | MW2 | MSSA476 | MRSA252 | N315 | |
ORFs | 2,641 | 2,683 | 2,604 | 2,698 | 2,726 | 2,681 | 2,618 | 2,515 | 2,714 | 2,632 | 2,597 | 2,655 | 2,593 |
ORFs with functions | 1,915 | 1,896 | 2,002 | 2,031 | 2,087 | 2,096 | 1,953 | 1,915 | 2,091 | 2,021 | 1,975 | 2,024 | 2,031 |
unique full EC no. | 650 | 646 | 671 | 663 | 670 | 663 | 666 | 666 | 667 | 665 | 671 | 675 | 668 |
Dual-fusion enzymes | 51 | 49 | 50 | 51 | 51 | 51 | 50 | 50 | 50 | 50 | 49 | 49 | 51 |
Triple-fusion enzymes | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 |
Quadruple-fusion enzymes | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 |
Very likely reactions | 1,231 | 1,213 | 1,255 | 1,247 | 1,254 | 1,247 | 1,254 | 1,248 | 1,251 | 1,251 | 1,258 | 1,258 | 1,253 |
Less likely reactions | 215 | 220 | 218 | 218 | 220 | 219 | 214 | 225 | 219 | 215 | 216 | 221 | 220 |
Likely reactions | 20 | 19 | 20 | 20 | 20 | 19 | 20 | 16 | 20 | 20 | 20 | 20 | 20 |
EC no. with reactions | 534 | 522 | 544 | 543 | 547 | 541 | 538 | 537 | 545 | 540 | 540 | 544 | 546 |
Cellular reactions | 1,208 | 1,186 | 1,224 | 1,222 | 1,227 | 1,220 | 1,214 | 1,213 | 1,225 | 1,219 | 1,217 | 1,223 | 1,227 |
Transport reactions | 141 | 146 | 148 | 144 | 146 | 145 | 150 | 151 | 145 | 147 | 152 | 152 | 146 |
Exchange reactions | 117 | 120 | 121 | 119 | 121 | 120 | 124 | 125 | 120 | 120 | 125 | 125 | 120 |
Metabolites | 1,412 | 1,399 | 1,428 | 1,422 | 1,431 | 1,422 | 1,425 | 1,414 | 1,427 | 1,421 | 1,432 | 1,437 | 1,431 |
The numbers of ORFs, functions, cellular reaction metabolites, and transport reactions identified for all the strains were used in the FBA and synthetic-lethal studies.