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. 2009 Jun 3;9:39. doi: 10.1186/1472-6807-9-39

Table 5.

Docking of acetylcholine and butyrylcholine

Docking into:
X-ray structures Substrate-imprinted structures


Structure ACh BuCh ACh BuCh
Torpedo californica acetylcholine esterase
Experimental data + - + -
1CFJa + + + -
1DX6a + + + +
1E3Qa - - + -
1EVEa + + + -
1VXRa, b - - - -
1QIM + + + -
No. false predictions 2 4 1 1

human butyrylcholine esterase
Experimental data + + + +
1P0M - - - -
1XLUa + + + +
1XLVa + + + +
1XLWa - - + +
No. false predictions 2 2 1 1

Docking of ACh and BuCh into six X-ray structures of the acetylcholine esterase from Torpedo californica and four X-ray structures of the human butyrylcholine esterase using FlexX. The substrates were docked into the not optimised X-ray structures and the substrate-imprinted structures. "+" and "-" indicate that the docking results predict ACh or BuCh to be a substrate or a non-substrate. Correct predictions are indicated by bold and large font type. Experimental data [45,46] is included for comparison. a Structure was resolved with an inhibitor bound. b Displaced histidine.