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. 2009 May 8;37(11):e79. doi: 10.1093/nar/gkp310

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© 2009 The Author(s)

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 2. — A scatter plot of Chip versus List frequencies for tokens in the ISG gene list. Each data point represents an abstract term. Terms that were identified as significantly enriched (i.e. Bonferroni P ≤ 0.05) in the ISG gene list by using the Outlier method are circled and the adjacent numbers corresponding to their rankings. Chip (y-axis) represents the number of genes associated with each term on the whole chip. List (x-axis) represents the number of genes associated with each term in the ISG gene list. The log 2-transformed List and Chip frequencies are plotted.