Table 2.
Unigene sequences (ESTs) representing proteins with regulatory roles.
| EST accession number (GenBank) | Name of the proteins/genes | EST redun-dancy for a gene (%)a | BLASTX search E-value | Mean EST length (bp) |
| FC932788 | 60S acidic ribosomal protein P0 | 0.93 | 4.00E-46 | 657 |
| FG228222 | Adenosine monophosphate binding protein-5 (AMP-binding) | 0.23 | 1.00E-64 | 543 |
| FC932702 | Appr-1-p processing enzyme family protein | 1.40 | 8.00E-12 | 132 |
| FC932664 | ATHB-1 (Homeobox-leucine zipper protein) | 3.76 | 4.00E-18 | 373 |
| FC932731 | C2 domain-containing protein | 0.23 | 3.00E-14 | 601 |
| FC932705 | C2H2 type zinc finger family protein | 0.23 | 3.00E-09 | 326 |
| FC932694 | C3H4-type zinc finger (RING finger) protein | 0.23 | 2.00E-12 | 247 |
| FC932783 | CBS domain-containing protein | 0.23 | 2.00E-25 | 254 |
| FC932656 | DnaJ protein, putativeb | 0.47 | 4.00E-67 | 467 |
| FC932677 | Ethylene responsive element binding protein (EREBP) | 0.93 | 6.00E-16 | 160 |
| FG228218 | Eukaryotic elongation factor 1A | 0.23 | 3.00E-42 | 321 |
| FC932688 | F-box domain containing protein, putative | 0.23 | 0.056 | 509 |
| FC932771 | GTP-binding protein, putative | 0.23 | 8.00E-44 | 276 |
| FC932675 | Homeodomain leucine zipper protein HDZ3b | 3.76 | 2.00E-18 | 373 |
| FC932662 | Jasmonate-induced protein homolog | 7.69 | 0.001 | 386 |
| FC932679 | Jasmonate-induced protein homolog | 2.80 | 1.00E-05 | 520 |
| FC932804 | Leucine-rich repeat family protein | 0.23 | 9.00E-28 | 315 |
| FC932737 | O-linked GlcNAc transferase like | 0.93 | 1.00E-04 | 307 |
| FC932759 | Pasticcino 1 | 0.23 | 1.00E-62 | 626 |
| FC932684 | Pre-mRNA splicing factor ATP-dependent RNA helicase-like proteinb | 0.23 | 2.30 | 610 |
| FC932706 | Putative sigma-like transcription factor | 0.23 | 2.00E-09 | 271 |
| FC932765 | Putative Zn-binding protein with RING finger | 1.17 | 7.00E-22 | 457 |
| FG228209 | Transducin family protein | 0.23 | 1.00E-47 | 380 |
| FG228219 | Valyl-tRNA synthetase, putative | 0.23 | 6.00E-36 | 539 |
| FC932666 | White collar 1 protein (WC1) | 0.23 | 9.70 | 311 |
ESTs sequences from the forward SSH cDNA library of S. maritima were grouped into singletons and contigs using TIGR Assembler and were termed as unigenes. The unigene sequences were blasted for homology search using BLASTX programme (default) at NCBI database. The search results for those unigenes representing proteins having regulatory function are summarized. EST redundancy of each unigene is also given along with the average size of the ESTs constituting the unigene.
aPercentage of the fraction of ESTs representing a unigene/total no. of ESTs
bGenes reported to be induced by salt