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. 2009 Jun 2;10:256. doi: 10.1186/1471-2164-10-256

Table 2.

Transcription factors identified in the endosperm cDNA library.

TF families No. of Loci No. of unisequences No. of ESTs
ABI3-VP1 7 9 11
AP2-EREBP 9 15 33
ARF 4 4 4
ARID 1 1 1
AUX-IAA 3 3 6
BBR-BPC 1 1 1
bHLH 12 20 30
bZIP 16 19 22
CCAAT-Dr1 1 1 2
CCAAT-HAP2 2 2 3
CCAAT-HAP3 5 7 61
CCAAT-HAP5 4 6 9
CPP 2 2 2
E2F-DP 2 3 3
EIL 1 3 3
GARP-ARR-B 1 2 2
GARP-G2-like 8 9 12
GRAS 3 4 4
HB 16 22 23
HMG 5 10 15
HSF 1 1 1
JUMONJI 5 5 6
LIM 1 1 1
MADS 12 16 18
MYB 13 18 20
MYB-related 6 25 30
NAC 9 15 16
other 24 32 48
PcG 2 2 2
SBP 1 1 1
TCP 2 2 2
TLP 5 8 10
Trihelix 5 7 8
WRKY 7 8 12
ZF-HD 1 1 1
zinc finger 19 25 34
Total 216 292 437

Note: In our endosperm cDNA library, 9,963 unique sequences (unisequences) were subjected to BLASTN against TAIR at <e-20, 7,585 unisequences can match Arabidopsis AGI identifiers. These AGIs represent 5,159 unigenes. Among these unigenes, 216 encode transcription factors. These TFs could be classified into 36 families according to the categroies of the website http://datf.cbi.pku.edu.cn/. The detail of each family was displayed as Additional file 10.