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. 2009 Jun 6;3:59. doi: 10.1186/1752-0509-3-59

Table 1.

Over-represented functional categories in N-bicluster 9

Term Observed Frequency % Expected Frequency % P-value
ENERGY 14.30% 1.50% 1.99E-11
 pentose-phosphate pathway 4.80% 0.10% 3.13E-08
 metabolism of energy reserves (e.g. glycogen, trehalose) 3.20% 0.10% 0.00073
 glycolysis and gluconeogenesis 5.60% 0.60% 0.00027
METABOLISM 21.40% 6.50% 9.80E-07
 C-compound and carbohydrate metabolism 13.50% 2.80% 2.62E-06
 amino acid metabolism 6.30% 0.90% 0.00059
  assimilation of ammonia, metabolism of the glutamate group 4.00% 0.20% 5.35E-05
  nitrogen and sulfur metabolism 4.80% 0.30% 4.35E-05
TRANSPORTED COMPOUNDS (SUBSTRATES) 5.60% 1.10% 0.0161

This table indicates the functional terms that are over-represented in N-bicluster 9 vs. the whole genome using BioMaps with a 5% FDR cutoff to determine the statistical significance of p-values (see Methods for approach). The frequency of these terms in the functional annotation of the genes from N-bicluster and the p-value generated by BioMaps are indicated.